Package index • HNSCclassifier

All functions

TCGA_LUSC: TCGA LUSC gene expression subset (log2 TPM)

TCGA_LUSC_ENSEMBL: TCGA LUSC gene expression subset (Ensembl IDs, log2 TPM)

classifyHNSC(): Classify Head and Neck Squamous Cell Carcinoma Samples into TCGA Subtypes

classifyHNSC_interface(): Launch the HNSCclassifier Shiny Web Interface

convert_id(): Convert Gene Identifiers in an Expression Matrix

extract_top_genes(): Extract Differentially Expressed Genes per Subtype

pathway_scores(): Extract Pathway-Level ssGSEA Enrichment Scores

plot_confusion_matrix(): Plot a Confusion Matrix from caret's confusionMatrix Object

plot_subtype_heatmap(): Plot a subtype‑specific gene expression heatmap

plot_subtype_probabilities(): Plot Posterior Subtype Probabilities for Each Sample

report_classification(): Generate an HTML Classification Report

summarize_subtype(): Summarize Molecular Subtype Classification Results